Table of Contents
Master Node
Storage Node
Compute Nodes (12)
Gigabit Ethernet Switch
Infiniband Switch
Software
Master Node
2 Intel Xeon E5-2640v4 (2.4GHz 10core)
64GB RAM
2 2TB 7200RPM, RAID1
Gigabit Ethernet
Infiniband
Storage Node
2 Intel Xeon E5-2650v4 (2.2GHz 12core)
64GB RAM
2 480GB SSDs (sdb and sdc, RAID, / and /boot)
12 4TB 7200RPM, (logical volume group vg-data, /data, RAID6)
Gigbit Ethernet
Inifiband
Compute Nodes (12)
10 nodes:
2 Intel Xeon E5-2640v4 (2.4GHz 10core)
64GB RAM
64GB SATA DOM (local filesystem)
2 nodes:
2 Intel Xeon Cascade Lake Gold 5215 (2.5GHz 10core)
128GB RAM
64GB SATA DOM (local filesystem)
Gigabit Ethernet Switch
Cisco 2960X
Infiniband Switch
Mellanox SwitchX-2
Software
Scheduler:
SLURM:
version 22.05.09
SLURM Documentation (
https://slurm.schedmd.com/archive/slurm-22.05.9/
)
Open OnDemand:
Build and run jobs, access a shell or an interactive session in your browser
Documentation (
https://openondemand.org/
)
Access Grinnell's Cluster (
https://hpc.grinnell.edu
)
MPI:
OpenMPI:
version 1.8.8gcc
Chemistry:
WebMO (
http://hpc.grinnell.edu/~webmo/cgi-bin/webmo/login.cgi
)
Application directory: /data/home/webmo/webmo
Globals config file: /data/home/webmo/webmo/globals.ini
Gaussian 09 (
http://gaussian.com
)
Application directory: /usr/local/gaussian
NBO6
Application directory: /usr/local/nbo6
Symbolic link: /usr/local/gaunbo6 → /usr/local/nbo6/bin/gaunbo6
GROMACS
Load with `module load gromacs2023.2`
Application directory: /usr/local/gromacs
Physics:
Charm++